Molecular Modeling

EMBO 2004
http://www.dddc.ac.cn/embo04/

TCBG Tutorial
http://www.psc.edu/general/software/alphabetical/alphabetical.html

PSC: Pittsburg Supercomputing Center
http://www.psc.edu/general/software/packages/
http://www.psc.edu/general/education/education.html
http://www.psc.edu/general/software/alphabetical/alphabetical.html

Structural Bioinformatics
http://www2.umdnj.edu/~kerrigje/structbio_II.htm

Macromolecular Visualization
http://www.chem.ucsb.edu/~kalju/chem110L/public/tutorial/start.html


Visualization resources

Projects
http://openil.sourceforge.net/projects.php

Vega
http://users.unimi.it/~ddl/

netpbm
http://netpbm.sourceforge.net/


Topology

Hetero-compound Information
http://alpha2.bmc.uu.se/hicup/

PRODRG
http://davapc1.bioch.dundee.ac.uk/programs/prodrg/